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Bacterial strains

id host organism strain plasmid chromosomal
insertion
keywords references additional info
1 Bacillus subtilis BR151 pTOO24lux plasmid: shuttle vector (G+ and G- replication), cadC, promoter of cadA, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
2 Bacillus subtilis BR151 pTOO24 lyophilized (Cd, Pb-sensor, lucFF) Tauriainen, S., et al. 1998. Bioelectron. 13, 931-938.
3 Bacillus subtilis BR151 pCSS962/pBL1 lyophilized (constitutively luminescent strain) Lampinen, J., et al. 1992. Mol. Gen. Genet. 232, 498-504
4 Bacillus subtilis BR151 pTOO24 lyophilized (Cd, Pb-sensor, lucFF) Tauriainen, S., et al. 1998. Bioelectron. 13, 931-938.
5 Bacillus subtilis BR151 pBL1/pTOO24lux lyophilized (Cd, Pb-sensor, luxCDABE) Ivask, A., et al. 2009. BMC Biotechnology 9, 41 pBL1 plasmid inserted by O.Bondarenko
6 Bacillus subtilis BR151 pBL1/p602/22lux lyophilized (luxCDABE) Ivask, A., et al. 2009. BMC Biotechnology 9, 41 pBL1 plasmid inserted by O.Bondarenko
7 Bacillus subtilis ATCC21332 rhamnolipid-producing strain, lyophilized Bacillus genetic stock center
8 Bacillus subtilis BR151 Young, F. E., et al. 1969. J. Bacteriol. 98, 1087–1097.
9 Escherichia coli  MC1061 Casadaban, M. J. and Cohen, S. N. J., 1980. J. Mol. Biol. 138, 179-207.
10 Escherichia coli SM10 lambda pir for amplification of R6K origin plasmids Miller, M. and Mekalanos, J. 1988. J.Bacteriol. 170(6), 2575-2583
11 Escherichia coli SY372 lambda pir for amplification of R6K origin plasmids Miller, M. and Mekalanos, J., 1984. Proc. Natl. Acad. Sci. USA 81, 3471-3475
12 Escherichia coli S17-1 lambda pir for conjugation Miller, M. and Mekalanos, J. 1988. J.Bacteriol. 170(6), 2575-2583
13 Escherichia coli K12 wild-type Bachmann, B. 1996. pp. 2460-2488. In Neidhardt et al. Escherichia coli and Salmonella: cellular and molecular biology. ASM Press.
14 Escherichia coli TG1 Invitrogen, Carlsbad, CA
15 Escherichia coli  MC1061 pSL1190+pzntA+luc plasmid: ColE1 ori, promoter of zntA and lucFF (firefly) constructed by A.Ivask
16 Escherichia coli  MC1061 pSL1190+zntR+pzntA+luc plasmid: ColE1 ori, zntR, promoter of zntA and lucFF (firefly) Ivask, A., et al. 2002. Soil Biol. Biochem. 34, 1439-1447
17 Escherichia coli  MC1061 pzntluc plasmid: ColE1 ori, zntR, promoter of zntA and lucFF (firefly) Ivask, A., et al. 2002. Soil Biol. Biochem. 34, 1439-1447
18 Escherichia coli  MC1061 pmerRBluc plasmid: ColE1 ori, merB, merR, promoter of mer operon, lucFF Ivask, A., et al. 2001. Anal. Chem. 73, 5168-5171.
19 Escherichia coli  MC1061 pmerRluc plasmid: ColE1 ori, merR, promoter of mer operon, lucFF Ivask, A., et al. 2001. Anal. Chem. 73, 5168-5171.
20 Escherichia coli  MC1061 pmerRlux plasmid: ColE1 ori, merR, promoter of mer operon, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
21 Escherichia coli  MC1061 pmerRBlux plasmid: ColE1 ori, merB, merR, promoter of mer operon, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
22 Escherichia coli  MC1061 pzntR/PDNPzntAluc contains 2 plasmids: zntR in high-copy (ColE1) plasmid, promoter of zntA and lucFF in low-copy (RK2) plasmid constructed by A.Ivask
23 Escherichia coli  MC1061 pDNpbrRluc plasmid: RK2 ori, pbrR, promoter of pbr operon, lucFF constructed by A.Ivask
24 Escherichia coli  MC1061 pDNpbrTluc plasmid: RK2 ori, pbrT, pbrR, promoter of pbr operon, lucFF constructed by A.Ivask
25 Escherichia coli  MC1061 pSLcueR/PDNPcopAluc contains 2 plasmids: cueR in high-copy (ColE1) plasmid, promoter of copA and lucFF in low-copy (RK2) plasmid Hakkila, K., et al. 2004. J. Appl. Toxicol. 24, 333-342.
26 Escherichia coli  MC1061 parslux Hakkila, K., et al. 2002. Anal. Biochem. 301(2), 235 – 242
27 Escherichia coli  MC1061 pTetlux Korpela, M. T., et al. 1998. Anal. Chem. 70, 4457-62
28 Escherichia coli  MC1061 pRKzntRPzntAlux plasmid:RK2 ori, zntRm promoter of zntA, luxCDABE. Non-inducible constructed by A.Ivask
29 Escherichia coli  MC1061 pSLcueR/PDNPcopAlux contains 2 plasmids: cueR in high-copy (ColE1) plasmid, promoter of copA and luxCDABE in low-copy (RK2) plasmid Ivask, A., et al. 2009. BMC Biotechnology 9, 41
30 Escherichia coli  MC1061 pSLzntR/PDNPzntAlux contains 2 plasmids: zntR in high-copy (ColE1) plasmid, promoter of zntA and luxCDABE in low-copy (RK2) plasmid Ivask, A., et al. 2009. BMC Biotechnology 9, 41
31 Escherichia coli  MC1061 p602/22lux plasmid: shuttle vector (for G- and G+), luxCDABE constructed by A.Ivask
32 Escherichia coli  MC1061 pDNPcopAluc plasmid: RK2 ori, promoter of copA, lucFF constructed by A.Ivask
33 Escherichia coli  MC1061 pDNPzntAlux plasmid: RK2 ori, promoter of zntA, luxCDABE constructed by A.Ivask
34 Escherichia coli  MC1061 pDNPzntAluc plasmid: RK2 ori, promoter of zntA, lucFF constructed by A.Ivask
35 Escherichia coli S17 lambda pir pTCRKnlux mating strain, plasmid: R6K ori, luxCDABE between Tn5 ends Ivask, A., et al. 2009. BMC Biotechnology 9, 41
36 Escherichia coli S17 lambda pir pTCR241T5luxcat mating strain, plasmid: R6K ori, luxCDABE between Tn5 ends constructed by A.Ivask
37 Escherichia coli SY372 lambda pir pTCRpbrlux mating strain, plasmid: R6K ori, pbrR, pbr promoter and luxCDABE between Tn5 ends Ivask, A., et al. 2009. BMC Biotechnology 9, 41
38 Escherichia coli S17 lambda pir pEXcadA2FRTneo For the construction of Pseudomonas putida KT2440 knock-out mutants Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
39 Escherichia coli SM10 lambda pir pEXcadA2FRTneo For the construction of Pseudomonas putida KT2440 knock-out mutants Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
40 Escherichia coli S17 lambda pir pEXczcA1FRTneo For the construction of Pseudomonas putida KT2440 knock-out mutants Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
41 Escherichia coli SM10 lambda pir pEXczcA1FRTneo For the construction of Pseudomonas putida KT2440 knock-out mutants Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
42 Escherichia coli S17 lambda pir pEXczcA2FRTneo For the construction of Pseudomonas putida KT2440 knock-out mutants Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
43 Escherichia coli SM10 lambda pir pEXczcA2FRTneo For the construction of Pseudomonas putida KT2440 knock-out mutants Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
44 Escherichia coli S17 lambda pir pSLcadA1FRTneo+oriT For the construction of Pseudomonas putida KT2440 knock-out mutants Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
45 Escherichia coli SM10 lambda pir pSLcadA1FRTneo+oriT For the construction of Pseudomonas putida KT2440 knock-out mutants Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
46 Escherichia coli K12 zitB::cat disrupted zitB constructed by A.Leedjärv
47 Escherichia coli K12  ΔzntA zitB::cat disrupted zitB, deleted zntA constructed by A.Leedjärv
48 Escherichia coli K12  ΔzntA  ΔzitB pDNlux deleted zitB and  zntA, plasmid: RK2 ori, luxCDABE constructed by A.Leedjärv
49 Escherichia coli K12 zntA::cat disrupted zntA constructed by A.Leedjärv
50 Escherichia coli K12  ΔzntA deleted zntA constructed by A.Leedjärv
51 Escherichia coli K12  ΔzitB deleted zitB constructed by A.Leedjärv
52 Escherichia coli K12  ΔzntA  ΔzitB deleted zitB and  zntA constructed by A.Leedjärv
53 Escherichia coli K12  ΔzntA pDNlux deleted zntA, plasmid: RK2 ori, luxCDABE constructed by A.Leedjärv
54 Escherichia coli K12  ΔzitB pDNlux deleted zitB, plasmid: RK2 ori, luxCDABE constructed by A.Leedjärv
55 Escherichia coli K12  ΔzntA  ΔzitB pSLzntR/PDNPzntAlux deleted zitB and  zntA, 2 plasmids: zntR in high-copy (ColE1) plasmid, promoter of zntA and luxCDABE in low-copy (RK2) plasmid constructed by A.Leedjärv
56 Escherichia coli K12  ΔzitB pSLzntR/PDNPzntAlux deleted zitB, 2 plasmids: zntR in high-copy (ColE1) plasmid, promoter of zntA and luxCDABE in low-copy (RK2) plasmid constructed by A.Leedjärv
57 Escherichia coli K12  ΔzntA pSLzntR/PDNPzntAlux deleted zntA, 2 plasmids: zntR in high-copy (ColE1) plasmid, promoter of zntA and luxCDABE in low-copy (RK2) plasmid constructed by A.Leedjärv
58 Escherichia coli K12 pSLzntR/PDNPzntAlux 2 plasmids: zntR in high-copy (ColE1) plasmid, promoter of zntA and luxCDABE in low-copy (RK2) plasmid Ivask, A., et al. 2009. BMC Biotechnology 9, 41
59 Escherichia coli K12 pDNlux plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
60 Escherichia coli XL-1 pmerGFP plasmid: merR, promoter of mer, GFP Hakkila, K., et al. 2002. Anal. Biochem. 301(2), 235 – 242
61 Escherichia coli K12 ::lux chromosomal insertion of luxCDABE constructed by A.Ivask
62 Escherichia coli MC1061 pSLlux plasmid: ColE1 ori, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
63 Escherichia coli  MC1061 pDNlux plasmid: ColE1 ori, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
64 Escherichia coli  MC1061 pCSS810 Lampinen, J., et al. 1992. Mol. Gen. Genet. 232, 498-504
65 Escherichia coli  MC1061 pTOO02 plasmid: T5/lac promoter, lucFF Ivask, A., et al. 2004. Chemosphere 55: 147-156.
66 Escherichia coli  MC1061 T5luxcat plasmid: T5 promoter, luxCDABE constructed by A.Ivask
67 Escherichia coli  MC1061 pRKzntlux plasmid: RK2 ori, zntR, promoter of zntA, luxCDABE constructed by A.Ivask
68 Escherichia coli  MC1061 pVI661wt Sarand, I., et al. 2001. Appl. Environ. Microbiol. 67(1), 162-171.
69 Escherichia coli  MC1061 pSLdmpRlux plasmid: ColE1 ori, dmpR, Pdmp, luxCDABE Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
70 Escherichia coli  MC1061 pSLdmpRluc plasmid: ColE1 ori, dmpR, Pdmp, lucFF Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
71 Escherichia coli K12 pSLdmplux plasmid: ColE1 ori, dmpR, Pdmp, luxCDABE Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
72 Escherichia coli K12 pDNdmplux plasmid: RK2 ori, dmpR, Pdmp, luxCDABE Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
73 Escherichia coli  MC1061 pTOO11 lyophilized (Hg-sensor, lucFF) Virta, M., et al. 1995. Anal. Chem. 67 (3), 667-669
74 Escherichia coli MC1061 pTOO31 lyophilized (As-sensor, lucFF) Tauriainen, S., et al. 1997. Appl. Environ. Microbiol. 63(11), 4456-61
75 Escherichia coli MC1061 parslux lyophilized (As-sensor, luxCDABE) Hakkila, K., et al. 2002. Anal. Biochem. 301(2), 235 – 242
76 Escherichia coli JM103 pCSS962/pBL1 lyophilized (constitutively luminescent strain) Lampinen, J., et al. 1992. Mol. Gen. Genet. 232, 498-504
77 Escherichia coli MC1061 pchrlux lyophilized (chrB, promoter of chrA, luxCDABE) constructed by A.Ivask
78 Escherichia coli SY372 lambda pir pTCRKn plasmid: R6K ori, Knr between Tn 5 ends constructed by A.Ivask
79 Escherichia coli SY372 lambda pir pTCRTc plasmid: R6K ori, Tcr between Tn 5 ends constructed by A.Ivask
80 Escherichia coli DH5 alfa pDN18N plasmid: RK2 ori Nunn, D., et al. 1990. J. Bacteriol. 172, 2911-2919
81 Escherichia coli SY372 lambda pir pTCRKncadlux plasmid: R6K ori, cadR, promoter of cadA, luxCDABE between Tn 5 ends Ivask, A., et al. 2009. BMC Biotechnology 9, 41
82 Escherichia coli DPD 2749 pRecALux1 plasmid: Promoter of recA, luxCDABE Vollmer, A., et al. 1997. Appl. Environ. Microbiol. 63(7), 2566-2571 DuPont
83 Peudomonas aeruginosa DS10-129 rhamnolipid-producing strain, lyophilized Rahman, K. S. M., et al. 2002. Bioresource Technology 81(1), 25-32
84 Peudomonas aeruginosa DS10-129 pDNcadlux rhamnolipid-producing strain, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE constructed by O.Bondarenko
85 Peudomonas aeruginosa PAO1 ATCC® Number: BAA-47™
86 Photobacterium phosphoreum Naturally luminescent bacterium
87 Pseudomonas fluorescens  OS8 rif wild-type, soil isolate Sarand, I., et al. 2000. FEMS Microbiol. Ecol. 31, 127-141.
88 Pseudomonas fluorescens OS8 ::dmpluc chromosomal insertion of dmpR, promoter of dmp and lucFF constructed by A.Leedjärv
89 Pseudomonas fluorescens OS8 ::dmplux chromosomal insertion of dmpR, promoter of dmp and luxCDABE constructed by A.Leedjärv
90 Pseudomonas fluorescens OS8 pDNdmpRlux plasmid: RK2 ori, dmpR, Pdmp, luxCDABE Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
91 Pseudomonas fluorescens OS8 pDNdmpRluc plasmid: RK2 ori, dmpR, Pdmp, lucFF constructed by A.Leedjärv
92 Pseudomonas fluorescens OS8 ::pTCR241 chromosomal insertion of lucFF constructed by A.Ivask
93 Pseudomonas fluorescens OS8 pDNlux plasmid: RK2 ori, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
94 Pseudomonas fluorescens OS8 ::lux chromosomal insertion of luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
95 Pseudomonas fluorescens OS8 pbrT2luc plasmid: RK2 ori, pbrT, promoter of pbr, lucFF constructed by A.Ivask
96 Pseudomonas fluorescens OS8 pDNmerRBlux plasmid: RK2 ori, merB, merR, promoter of mer operon, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
97 Pseudomonas fluorescens OS8 ::coplux chromosomal insertion of cueR, promoter of copA, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
98 Pseudomonas fluorescens OS8 pDNchrluc plasmid: RK2 ori, chrB, promoter of chrA, lucFF constructed by A.Ivask
99 Pseudomonas fluorescens OS8 ::zntlux chromosomal insertion of zntR, promoter of zntA, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
100 Pseudomonas fluorescens OS8 pDNpbrRlux plasmid: RK2 ori, pbrR, promoter of pbr, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
101 Pseudomonas fluorescens OS8 pDNcadRPcadAlux plasmid: RK2 ori, cadR, promoter of cadA, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
102 Pseudomonas fluorescens OS8 pDNmerRBluc plasmid: RK2 ori, merB, merR, promoter of mer operon, lucFF constructed by A.Ivask
103 Pseudomonas fluorescens OS8 pbrR35luc plasmid: RK2 ori, pbrR, lucFF constructed by A.Ivask
104 Pseudomonas fluorescens OS8 pbrT3luc plasmid: RK2 ori, pbrT, lucFF constructed by A.Ivask
105 Pseudomonas fluorescens OS8 pDNcadluc plasmid: RK2 ori, cadR, promoter of cadA, lucFF constructed by A.Ivask
106 Pseudomonas fluorescens OS8 pDNzntRPzntAlux plasmid: RK2 ori, zntR, promoter of zntA, luxCDABE constructed by A.Ivask
107 Pseudomonas fluorescens OS8 pDNcueRPcopAlux plasmid: RK2 ori, cueR, promoter of copA, luxCDABE constructed by A.Ivask
108 Pseudomonas fluorescens OS8 pDNcueRPcopAluc plasmid: RK2 ori, cueR, promoter of copA, lucFF constructed by A.Ivask
109 Pseudomonas fluorescens OS8 pDNzntRPzntAluc plasmid: RK2 ori, zntR, promoter of zntA, lucFF constructed by A.Ivask
110 Pseudomonas fluorescens OS8 ::cadlux chromosomal insertion of cadR, promoter of cadA and luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
111 Pseudomonas fluorescens OS8 ::cadluc chromosomal insertion of cadR, promoter of cadA and lucFF constructed by T.Rõlova
112 Pseudomonas fluorescens OS8 ::pbrlux chromosomal insertion of pbrR, promoter of pbr and luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
113 Pseudomonas fluorescens OS8 ::merRBlux chromosomal insertion of merB, merR, promoter of mer and luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
114 Pseudomonas putida KT2440 Bagdasarian, M., et al. 1981. Gene 16, 237-247.
115 Pseudomonas putida PaW85 Bayley, S. A., et al. 1977. Mol. Gen. Genet. 154, 203–204.
116 Pseudomonas putida KT2440 pDNmerRBlux plasmid: RK2 ori, merB, merR, promoter of mer operon, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
117 Pseudomonas putida PaW85 pDNlux plasmid: RK2 ori, luxCDABE constructed by A.Leedjärv
118 Pseudomonas putida KT2440 pDNlux plasmid: RK2 ori, luxCDABE constructed by A.Leedjärv
119 Pseudomonas putida PaW85 ::pTCR241 chromosomal insertion of lucFF constructed by A.Ivask
120 Pseudomonas putida KT2440 pDNpbrlux plasmid: RK2 ori, pbrR, promoter of pbr, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
121 Pseudomonas putida PaW85 pDNcadlux plasmid: RK2 ori, cadR, promoter of cadA, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
122 Pseudomonas putida PaW85 pDNpbrluc plasmid: RK2 ori, pbrR, promoter of pbr, lucFF constructed by A.Ivask
123 Pseudomonas putida KT2440 pDNcadlux plasmid: RK2 ori, cadR, promoter of cadA, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
124 Pseudomonas putida PaW85 pDNcadluc plasmid: RK2 ori, cadR, promoter of cadA, lucFF constructed by A.Ivask
125 Pseudomonas putida KT2440 pVI661wt ::PoluxAB Sarand, I., et al. 2001. Appl. Environ. Microbiol. 67(1), 162-171.
126 Pseudomonas putida KT2440 pVI360 ::dmpR Sarand, I., et al. 2001. Appl. Environ. Microbiol. 67(1), 162-171.
127 Pseudomonas putida KT2440 pDNlux ::dmpR Sarand, I., et al. 2001. Appl. Environ. Microbiol. 67(1), 162-171. constructed by A.Leedjärv
128 Pseudomonas putida KT2440 pDNdmpRlux plasmid: RK2 ori, dmpR, Pdmp, luxCDABE Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
129 Pseudomonas putida KT2440 ::PoluxAB Sarand, I., et al. 2001. Appl. Environ. Microbiol. 67(1), 162-171.
130 Pseudomonas putida KT2440 ::dmpR Sarand, I., et al. 2001. Appl. Environ. Microbiol. 67(1), 162-171.
131 Pseudomonas putida KT2440 pVI661 ::PoluxAB Sarand, I., et al. 2001. Appl. Environ. Microbiol. 67(1), 162-171.
132 Pseudomonas putida PaW85 pDNdmplux plasmid: RK2 ori, dmpR, Pdmp, luxCDABE Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
133 Pseudomonas putida PaW85 ::dmpluc chromosomal insertion of dmpR, promoter of dmp and lucFF constructed by A.Leedjärv
134 Pseudomonas putida PaW85 ::dmplux chromosomal insertion of dmpR, promoter of dmp and luxCDABE constructed by A.Leedjärv
135 Pseudomonas putida KT2440 ΔczcA1 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
136 Pseudomonas putida KT2440 ΔczcA2 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
137 Pseudomonas putida KT2440 ΔcadA2 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
138 Pseudomonas putida KT2440 czcA1::FRTkan metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
139 Pseudomonas putida KT2440 czcA2::FRTkan metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
140 Pseudomonas putida KT2440 cadA2::FRTkan metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
141 Pseudomonas putida KT2440 ΔczcA2 pDNcadlux metal transporter knock-out mutant, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
142 Pseudomonas putida KT2440 ΔczcA2 pDNlux metal transporter knock-out mutant, plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
143 Pseudomonas putida KT2440 ΔcadA1 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
144 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
145 Pseudomonas putida KT2440 ΔczcA2 ΔcadA1 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
146 Pseudomonas putida KT2440 ΔczcA2 ΔczcA1 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
147 Pseudomonas putida KT2440 cadA1::FRTkan metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
148 Pseudomonas putida KT2440 cadA2::FRTkan metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
149 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 ΔcadA1 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
150 Pseudomonas putida KT2440 ΔczcA1 ΔcadA2 ΔcadA1 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
151 Pseudomonas putida KT2440 ΔczcA2 ΔcadA1 czcA1::FRTkan metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
152 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 ΔczcA1 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
153 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 ΔcadA1 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
154 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 ΔcadA1ΔczcA1 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
155 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 czcA1::FRTkan metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
156 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 cadA1::FRTkan metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
157 Pseudomonas putida KT2440 ΔczcA1 ΔcadA2 cadA1::FRTkan metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
158 Pseudomonas putida KT2440 ΔczcA1 ΔcadA2 metal transporter knock-out mutant Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
159 Pseudomonas putida KT2440 ΔczcA1 pDNcadlux metal transporter knock-out mutant, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
160 Pseudomonas putida KT2440 ΔczcA1 pDNlux metal transporter knock-out mutant, plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
161 Pseudomonas putida KT2440 ΔcadA1 pDNcadlux metal transporter knock-out mutant, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
162 Pseudomonas putida KT2440 ΔczcA1 pDNlux metal transporter knock-out mutant, plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
163 Pseudomonas putida KT2440 ΔcadA2 pDNcadlux metal transporter knock-out mutant, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
164 Pseudomonas putida KT2440 ΔczcA1 pDNlux metal transporter knock-out mutant, plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
165 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 ΔcadA1 pDNcadlux metal transporter knock-out mutant, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
166 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 ΔcadA1 pDNlux metal transporter knock-out mutant, plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
167 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 ΔczcA1 pDNcadlux metal transporter knock-out mutant, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
168 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 ΔcadA1 pDNlux metal transporter knock-out mutant, plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
169 Pseudomonas putida KT2440 ΔczcA1ΔcadA2 cadA1::FRTkan pDNcadlux metal transporter knock-out mutant, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
170 Pseudomonas putida KT2440 ΔczcA1ΔcadA2 cadA1::FRTkan pDNlux metal transporter knock-out mutant, plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
171 Pseudomonas putida KT2440 ΔczcA1 ΔcadA2 ΔcadA1 pDNcadlux metal transporter knock-out mutant, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
172 Pseudomonas putida KT2440 ΔczcA1 ΔcadA2 ΔcadA1 pDNlux metal transporter knock-out mutant, plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
173 Pseudomonas putida KT2440 ΔczcA2 ΔcadA1 ΔczcA1::FRTkan pDNcadlux metal transporter knock-out mutant, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
174 Pseudomonas putida KT2440 ΔczcA2 ΔcadA1 ΔczcA1::FRTkan pDNlux metal transporter knock-out mutant, plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
175 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 ΔcadA1ΔczcA1::FRTkan pDNcadlux metal transporter knock-out mutant, plasmid: RK2 ori, cadR, promoter of cad, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
176 Pseudomonas putida KT2440 ΔczcA2 ΔcadA2 ΔcadA1ΔczcA1::FRTkan pDNlux metal transporter knock-out mutant, plasmid: RK2 ori, luxCDABE Leedjärv, A., et al. 2008. J. Bateriol. 190(8), 2680-2689
177 Ralstonia eutropha AE104 pDNlux chromosomal insertion of lucFF constructed by A.Ivask
178 Ralstonia eutropha AE104 pDNpbrRT plasmid: RK2 ori, pbrR, pbrT, lucFF constructed by A.Ivask
179 Ralstonia eutropha AE104 pchrBluc plasmid: RK2 ori, chrB, promoter of chrA, lucFF Ivask, A., et al. 2002. Soil Biol. Biochem. 34, 1439-1447
180 Ralstonia eutropha AE104 pchrlux plasmid: RK2 ori, chrB, promoter of chrA, luxCDABE constructed by A.Ivask
181 Ralstonia eutropha AE104 Plasmid free derivative of CH34, metal sensitive Mergeay, M., et al. 1985. J. Bacteriol. 162 (1), 328-334.
182 Salmonella typhimurium TA97a AMES test strain (mutagenicity test) MOLTOX (71-097aL)
183 Salmonella typhimurium TA98 AMES test strain MOLTOX (71-098L)
184 Salmonella typhimurium TA100 AMES test strain MOLTOX (71-100L)
185 Salmonella typhimurium TA102 AMES test strain MOLTOX (71-102L)
186 Salmonella typhimurium TA1535 AMES test strain MOLTOX (71-1535)
187 Staphylococcus aureus RN4220 non-pathogenic strain Kreiswirth, B. N., et al. 1983. Nature  305, 709-712.
188 Staphylococcus aureus RN4220 pCSS810 Lampinen, J., et al. 1992. Mol. Gen. Genet. 232, 498-504
189 Staphylococcus aureus RN4220 pTOO02 plasmid: T5/lac promoter, lucFF Ivask, A., et al. 2004. Chemosphere 55: 147-156.
190 Staphylococcus aureus RN4220 pTOO24lux plasmid: shuttle vector (G+ and G- replication), cadC, promoter od cad, luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
191 Staphylococcus aureus RN4220 p602/22lux plasmid: shuttle vector (G+ and G- replication), luxCDABE Ivask, A., et al. 2009. BMC Biotechnology 9, 41
192 Vibrio fisheri Naturally luminescent bacterium
193 Staphylococcus epidermidis ATCC 12228
194 Micrococcus luteus University of Tartu; E. Heinaru
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Bacterial plasmids

id plasmid parent plasmid newly inserted elements keywords references additional info
1 pchrBluc pRK415 (RK2 ori) chrB, PchrA, lucFF Tetracycline Ivask, A., et al. 2002. Soil Biol. Biochem. 34, 1439-1447
2 pmerRluc pSL1190 (ColE1) merR (BS), lucFF Ampicillin Ivask, A., et al. 2001. Anal. Chem. 73, 5168-5171.
3 pmerRBluc pSL1190 (ColE1) merR (BS), merB, lucFF Ampicillin constructed by A.Ivask
4 pSLdmpmutlux pSL1190 (ColE1) dmpR(E135K), luxCDABE Ampicillin Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
5 pSLdmpluc pSL1190 (ColE1) dmpR, lucFF Ampicillin constructed by A.Leedjärv
6 pSLdmpmutluc pSL1190 (ColE1) dmpR(E135K), lucFF Ampicillin constructed by A.Leedjärv
7 pTCRdmplux pTCR241 (RK2 ori) dmpR, luxCDABE Ampicillin, Kanamycin constructed by A.Leedjärv
8 pDNdmpmutlux pDN18N (RK2 ori) dmpR, luxCDABE Tetracycline Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
9 pDNdmpmutluc pDN18N (RK2 ori) dmpR, lucFF Tetracycline constructed by A.Leedjärv
10 pDNzntlux pDN18N (RK2 ori) PzntA, zntR, luxCDABE Tetracycline constructed by A.Ivask
11 pDNlux pDN18N (RK2 ori) luxCDABE Tetracycline Leedjärv, A., et al. 2006. Chemosphere 64(11), 1910-1919
12 pDNpbrlux pDN18N (RK2 ori) pbrR, Ppbr, luxCDABE Tetracycline Ivask, A., et al. 2009. BMC Biotechnology 9, 41
13 pDNcopAlux pDN18N (RK2 ori) PcopA, luxCDABE Tetracycline constructed by A.Ivask
14 pDNcopAluc pDN18N (RK2 ori) PcopA, lucFF Tetracycline constructed by A.Ivask
15 pDNPzntAluc pDN18N (RK2 ori) PzntA, lucFF Tetracycline constructed by A.Ivask
16 pTOO02 pCSS810 (shuttle vector for G- and G+) lucFF Kanamycin Ivask, A., et al. 2004. Chemosphere 55: 147-156.
17 pVI661wt Carbenicillin/Ampicillin, Kanamycin Sarand, I., et al. 2001. Appl. Environ. Microbiol. 67(1), 162-171.
18 pVI661 Carbenicillin/Ampicillin, Kanamycin Sarand, I., et al. 2001. Appl. Environ. Microbiol. 67(1), 162-171.
19 pTCRpbrlux pTCR241 (R6K ori) Ppbr, pbrR, luxCDABE Ampicillin, Kanamycin Ivask, A., et al. 2009. BMC Biotechnology 9, 41
20 pTCRluxT5 pTCR241 (R6K ori) T5/lacZ promoter, luxCDABE Ampicillin, Kanamycin constructed by A.Ivask
21 pTCRcadluc pTCR241 (R6K ori) cadR, PcadA, lucFF Ampicillin, Kanamycin constructed by A.Ivask
22 pTCRmerRBlux pTCR241 (R6K ori) merR, merB, Pmer, luxCDABE Ampicillin, Kanamycin Ivask, A., et al. 2009. BMC Biotechnology 9, 41
23 pTCRzntlux pTCR241 (R6K ori) zntR, PzntA, luxCDABE Ampicillin, Kanamycin Ivask, A., et al. 2009. BMC Biotechnology 9, 41
24 pTCRcoplux pTCR241 (R6K ori) cueR, PcopA, luxCDABE Ampicillin, Kanamycin Ivask, A., et al. 2009. BMC Biotechnology 9, 41
25 pTCRcadlux pTCR241 (R6K ori) cadR, PcadA, luxCDABE Ampicillin, Kanamycin Ivask, A., et al. 2009. BMC Biotechnology 9, 41
26 pTCRKn pTCR241 (R6K ori) Ampicillin, Kanamycin constructed by A.Ivask
27 pTCRKnlux pTCR241 (R6K ori) luxCDABE Ampicillin, Kanamycin Ivask, A., et al. 2009. BMC Biotechnology 9, 41
28 pTCRchrlux pTCR241 (R6K ori) chrB, PchrA, luxCDABE Ampicillin, Kanamycin constructed by A.Ivask
29 p602/22lux p602/22 (shuttle vector for G- and G+) luxCDABE (for g+) Kanamycin Ivask, A., et al. 2009. BMC Biotechnology 9, 41
30 pTOO24lux pTOO24 (shuttle vector for G- and G+) luxCDABE (for g+) Kanamycin Ivask, A., et al. 2009. BMC Biotechnology 9, 41
31 pBL1 streptomycin Le Grice, S. F. J., et al. 1987. Gene 55, 95-103
32 pSL1190 ampicillin Pharmacia
33 pSLlux pSL1190 (ColE1) luxCDABE ampicillin Ivask, A., et al. 2009. BMC Biotechnology 9, 41
34 pSL1190+pTOO11 pSL1190 (ColE1) lucFF plasmiididst pTOO11 ampicillin constructed by A.Ivask
35 pDNchrBlux 72 pDN18N (RK2 ori) chrB, luxCDABE tetracycline constructed by A.Ivask
36 pSLchrlux pSL1190 (ColE1) chrB, luxCDABE ampicillin constructed by A.Ivask
37 pRKchrlux pRK415 (RK2 ori) chrB, luxCDABE tetracycline constructed by A.Ivask
38 pTCRTc pTCR241 (R6K ori) Tc from pBR322 ampicillin, tetracycline constructed by A.Ivask
39 pDN18N RK2 plasmid, T7 promoter tetracycline Nunn, D., et al. 1990. J. Bacteriol. 172, 2911-2919
40 psodAlux pSL1190 (ColE1) PsodA, luxCDABE ampicillin constructed by N.Jepihhina
41 pkatGlux pSL1190 (ColE1) PkatG, luxCDABE ampicillin constructed by N.Jepihhina
42 pFLP2 Hoang, T. T., et al. 1998. Gene 212(1), 77-86
43 pRK415 RK2 plasmid tetracycline Keen, N. T., et al. 1988. Gene 70(1), 191-197
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Yeasts

id strain description origin/collection
1 Saccharomyces cerevisiae 288C Laboratory strain ATCC 204508
2 Saccharomyces cerevisiae W303-1a Laboratory strain ATCC 208352
3 Saccharomyces cerevisiae BY4741 Laboratory strain EUROSCARF (Y00000)
4 Saccharomyces cerevisiae BY4743 Laboratory strain EUROSCARF (Y20000)
5 Saccharomyces cerevisiae EG103 Laboratory strain University of California, LA; Dr. E. Gralla
6 Saccharomyces cerevisiae EG110 Deletion mutant (SOD2) University of California, LA; Dr. E. Gralla
7 Saccharomyces cerevisiae EG118 Deletion mutant (SOD1) University of California, LA; Dr. E. Gralla
8 Saccharomyces cerevisiae EG133 Deletion mutant (SOD1 and SOD2) University of California, LA; Dr. E. Gralla
9 Saccharomyces cerevisiae BMA64-1A (pSALluc-skl) Recombinant luminescent Cu-specific biosensor University of Helsinki; Dr. P. Leskinen
10 Saccharomyces cerevisiae BMA64-1A (pRS316luc) Recombinant luminescent strain University of Helsinki; Dr. P. Leskinen
11 Saccharomyces cerevisiae EC118 Wine yeast Lallemand
12 Saccharomyces uvarum W34 Brewer’s yeast Lallemand
13 Saccharomyces cerevisiae M Distillery yeast Moe Distillery, Estonia
14 Saccharomyces cerevisiae XII Distillery yeast Moe Distillery, Estonia
15 Hansenula polymorpha 201 Laboratory methylotrophic yeast University of Tartu; Dr. T. Alamäe
16 Candida albicans CA14 University of Tartu; T. Sedman

Saccharomyces cerevisiae BY4741 single-gene deletion mutants from EUROSCARF collection

id Accession number in EUROSCARF collection Deleted gene/ORF Gene/strain name
1 Y06913 YJR104c SOD1
2 Y06605 YHR008c SOD2
3 Y03615 YDR256c CTA1
4 Y04718 YGR088w CTT1
5 Y07097 YJL101c GSH1
6 Y02737 YPL091w GLR1
7 Y04069 YDR135c YCF1
8 Y06681 YCL035c GRX1
9 Y04347 YDR513w GRX2
10 Y02769 YPL059w GRX5
11 Y24190 YDR353w TRR1
12 Y04839 YGR209c TRX2
13 Y04875 YKL026c GPX1
14 Y05972 YIR037w HYR1
15 Y00614 YMR038c CCS1
16 Y00569 YML007w YAP1
17 Y02900 YHR206w SKN7
18 Y05982 YKR066c CCP1
19 Y05738 YBR290w BSD2
20 Y04533 YGL166w CUP2
21 Y01807 YOR031w CRS5
22 Y03629 YDR270w CCC2
23 Y01185 YNL259c ATX1
24 Y04964 YKL114c APN1
25 Y01971 YNL241c ZWF1
26 Y02877 YHR183w GND1
27 Y01305 YJL121c RPE1
28 Y05493 YPR074c TKL1
29 Y03071 YBL045c COR1
30 Y00788 YMR202w ERG2
31 Y02667 YLR056w ERG3
32 Y00568 YML008c ERG6
33 Y24422 YGL055w OLE1
34 Y05574 YPR159w KRE6
35 Y05251 YLR342w FKS1
36 Y05882 YGR229c KNR4
37 Y03160 YBR023c CHS3
38 Y01784 YOR008c SLG1
39 Y07054 YKR053c YSR3
40 Y03215 YBR078w ECM33
41 Y03604 YDR245w MNN10
42 Y02992 YNL084c END3
43 Y00897 YMR307w GAS1
44 Y02112 YPL140c MKK2
45 Y07026 YKL096w-a CWP2
46 Y03756 YDL059c RAD59
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Various ecotoxicological test organisms

id species taxonomy common name synonym references origin
1 Daphnia magna Straus Kingdom Animalia, Phylum crustacea, Class Brachiopoda,
order Cladocera
water flea (1) Kahru, A., et al. 2000. Environmental Toxicology 15, 431-442;
(2) Manusadzianas, L., et al. 2003. Aquatic Toxicology 63, 27-41;
(3) Põllumaa, L., et al. 2004. JSS-J Soils & Sediments 4, 267-275;
(4) Heinlaan, M., et al. 2008. Chemosphere 71, 1308-1316.
MicroBioTests Inc. – Kleimoer 15 – 9030 Mariakerke (Gent) – Belgium
2 Thamnocephalus platyurus Kingdom Animalia, Phylum Crustacea, Class Brachiopoda, order Anostraca fairy shrimp (1) Kahru, A., et al. 2000. Environmental Toxicology 15, 431-442;
(2) Manusadzianas, L., et al. 2003. Aquatic Toxicology 63, 27-41;
(3) Põllumaa, L., et al. 2004. JSS-J Soils & Sediments 4, 267-275;
(4) Heinlaan, M., et al. 2008. Chemosphere 71, 1308-1316.
MicroBioTests Inc. – Kleimoer 15 – 9030 Mariakerke (Gent) – Belgium
3 Tetrahymena thermophila strains BIII, CU427, CU428 Kingdom Protozoa, Phylum Ciliophora, class Ciliatea, order Hymenostomatida (1) Kahru, A., et al. 2000. Environmental Toxicology 15, 431-442;
(2) Manusadzianas, L., et al. 2003. Aquatic Toxicology 63, 27-41;
(3) Põllumaa, L., et al. 2004. JSS-J Soils & Sediments 4, 267-275;
(4) Mortimer, M., et al. 2008. 15th International Congress on In Vitro Toxicology, Stockholm, Sweden, Sept. 25-28, 2008.
BIII – MicroBioTests Inc. – Kleimoer 15 – 9030 Mariakerke (Gent) – Belgium; CU427 and CU428 – University of Camerino (via Katre Juganson)
4 Raphidocelis subcapitata Kingdom Plantae, Phylum Chlorophyta, class Chlorophyceae, order Sphaeropleales green algae Selenastrum capricornutum, Kirchneriella subcapitata, Kirchneria subcapitata, Pseudokirchneriella subcapitata (1) Aruoja, V., et al. 2004. Environmental Toxicology 19, 396-402;
(2) Aruoja, V., et al. 2009. Sci Tot Env 407, 1461-1468;
(3) Blinova, I. 2004. Environmental Toxicology 19, 425-428.
MicroBioTests Inc. – Kleimoer 15 – 9030 Mariakerke (Gent) – Belgium
5 Chlorella vulgaris Kingdom Plantae, Phylum Chlorophyta, Class Trebouxiophyceae, Order Chlorellales green algae Chlorella pyrenoidosa var. Dupleks, Pleurococcus beijerinckii, Chlorella communis, Chlorella vulgaris var. viridis, Chlorella terricola, Chlorella candida Heriot-Watt University (via Elise Joonas)
6 Chlamydomonas reinhardtii Kingdom Plantae, Phylum Chlorophyta, Class Chlorophyceae, Order Chlamydomonadale green algae Chlamydomonas morieri Dangeard, Chlamydomonas pseudodebaryana Brabez University of Geneva (via Margit Heinlaan)
7 Nitzschia palea Kingdom Chromista, Phylum Bacillariophyta, Class Bacillariophyceae, Order Bacillariales diatom Synedra palea Kützing, Homoeocladia palea (Kützing) Kuntze Culture Collection of Algae at the University of Göttingen
8 Fistulifera pelliculosa Kingdom Chromista, Phylum Bacillariophyta, Class Bacillariophyceae, Order Naviculales, Suborder Naviculineae diatom Synedra minutissima var. pelliculosa Kützing, Navicula pelliculosa (Kützing) Hilse, Schizonema pelliculosum (Brébisson)Kuntze Culture Collection of Algae at the University of Göttingen)
9 Synechocystis sp. Kingdom Eubacteria, Phylum Cyanobacteria, Class Cyanophyceae, Order Synechococcales cyanobacteria University of Geneva (via Margit Heinlaan)
10 Lemna minor Kingdom Plantae, Division Magnoliophyta, order Alismatales, Family Araceae common duckweed Blinova, I. 2004. Environmental Toxicology 19, 425-428.
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Eukaryotic cell lines

id cell line description/biological source origin
1 A549 Human adenocarcinomic alveolar basal epithelial cells ATCC®CCL-185
2 Caco2 Human epithelial colorectal adenocarcinomic cells ATCC®HTB-37
3 K562 Human myelogenous leukemia cell lines ATCC®CCL-243
4 LNCaP clone FGC Human prostate metastatic cells from left supraclavicular lymph node ATCC®CRL-1740
5 PC-3 Human epithelial prostate adenocarcinoma metastatic cells from bone Tallinn University of Technology
6 PC-12 Rat adrenal gland pheochromocytoma cells Tallinn University of Technology
7 MCF7 Human mammary gland adenocarcinomic cells Tallinn University of Technology
8 B16-F10 Mouse skin melanoma cells Tartu University
9 18-BALB/c 3T3 Mouse embryonal fibroblasts FICAM (ATCC®CCL-163)
10 NR8383 Rat lung macrophages FICAM (ATCC®CCL-2192)
11 THP-1 Human peripherial blood monocyte, acute monocytic leukemia cell line Universite de Namur
12 HEpG2 Human hepatic epithelial hepatocellular carcinoma cells Universite de Namur
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Soils, sediments, etc

id  collection  project  information  contamination  date of sampling  nr samples chemical analysis  ecotoxicity analysis  biosensor analysis  article
1 Sediments of Baltic Sea Nessling Analysis of bioavailable heavy metals and organic compounds in the Baltic Sea (2001-2003) Heavy metals (Zn, Cd, Pb) 2001 229  +  –  + (1). A. Ivask. PhD Thesis. Tallinn University of Technology, 2006;
(2). A. Ivask,  et al. 2002. Toxicology Letters135, S101
2 Heavy metals polluted soils (France, smelter-influenced soils) NICPB/France Combined risk assessment of agricultural soils polluted by industrial activities (2000 -2005) Heavy metals (Zn, Cd, Pb) 2001-2002 200  +  +  + (1) Ivask, A., et al. 2004. Chemosphere, Vol 22, p. 147-156.;
(2) Aruoja, V., et al. 2004. Environ. Toxicol. 19, 396-402;
(3) Kahru, A., et al. 2005. Environ. Toxicol. Chem. 24, 2973-2982;
(4) Francois, M., et al. 2004. Aquat Sci 66, 1–8.
3 Spiked presumably clean soils (with heavy metals) NICPB Soil E9 was spiked as well as KJ-muld and KJ-liiv Heavy metals (Zn, Cd, Pb) 2000-2001 (E9) and 2006 (KJ muld and K-Liiv) 42 spiked soils  –  + Ivask, A., et al. 2002. Soil Biol. Biochem. 34, 1439-1447
4 PAH polluted and phyto-treated soils (France, Harnes, territory of former cockery) NICPB/France Combined risk assessment of agricultural soils polluted by industrial activities (2000 -2005) EPA 16PAH 2001-2003 22  +  +  – (1) NICPB Contract Reports 2001-2003;
(2) Kasemets, K., et al. NATO ARW „Bioremediaiton of soil contaminated with aromatic compounds: effects of rhizosphere, bioavailability, gene regulation and stress adaptation. Tartu, July 1.-3., 2004. ISBN 9985-4-0392-4, p. 28;
(3) Kasemets, K. et, al. ISTA 12 Symposium, June 12-17, 2005, Skiathos, Greece;
(4) Kahru, A. et al. 7th Regional Meeting of the Central and Eastern European Section. SECOTOX 2002, Czech Republic, Brno, 14.-16.10.2002, p. 131-134. ISBN 80-210-297-4.
5 Industrial-influenced and bioremediated soils (microbial and fungal treatment) -Czech, Sobeslav region NICPB/Norway/Czech Evaluation of composting and fungal treatment technology for remediation of PAH contaminated soil (2002-2003) Mixed pollution (PAH jne), composting and fungal treatment experiments 2003 25  +  +  – (1) Kahru, A., et al. SETAC 2004, Prague 18.-22. april 2004, p. 86-87;
(2) Kahru, A. et al. NATO ARW „Bioremediaiton of soil contaminated with aromatic compounds: effects of rhizosphere, bioavailability, gene egulation and stress adaptation. Tartu, July 1.-3., 2004. ISBN 9985-4-0392-4, p.19.
6 Estonia and Lithuania soils and sediments (lagoons etc) NICPB/Lithuania Ecotoxicological evaluation of environmenatl pollution in Estonia and Lithuania: A comparataive study. Mixed pollution 1999 28  +  +  – (1) Põllumaa, L., et al. 2004. Journal of soils and sediments 4, 267-275
(2) Final report of Contract RSS 430/1999 (Anne Kahru).
7 Raadi Airfield soils (previous military airfiled) NICPB/EMÜ Cooperation between NICPB; Estonian Univeristy of Life Sciences Mixed pollution 2004 18  +  +  – (1)Heinlaan, M., et al. 2007. Atla 35, 101-110.
(2) Margit Heinlaan. BSc Thesis. Estonian University of Life Sciences, 2005
8 Pakri Peninsula soils NICPB/BEST Summer School (www.best.ee) BEST international summer course on ecotoxicology «For Greener Grass », Tallinn, 26.06-10.07.2005 Mixed pollution? 2005 5  –  +  – No official reports
9 Presumably clean control soils NICPB  E8, E9 Controls (presumably no pollution) 1999 2  +  +  – (1) L. Põllumaa. PhD Thesis. Tallinn University of Technology, 2005;
(2) Kahru, A. and Põllumaa, L. 2006. Oil Shale, 23(1), 53 – 93;
(3) Põllumaa et al. 2001. ATLA 29, 259-267.
10 Kohtla-Järve presumably clean soils (Aidu open-cast) NICPB K-Liiv, K-muld Controls (presumably no pollution) 2001 2  +  –  – K-muld:  in report: Kahru, A., Sihtmäe, M. (2007). Põlevkivituha CO2ga neutraliseerimise/karboniseerimise mõju saadud produkti ökotoksilisusele. 3-1 – 3-35.
11 Kiviõli, Kohtla-Järve oil-shale industry semi coke (4) and Narva Power Plants ash (3) samples Norway/TUT/NICPB Risk based environmental site assessment of the oil-shale industry in Estonia (2002-2003) Heavy metals, BTX, PAH etc 2002 7  +  +  – (1) Sørlie, J.-E., et al. 2004. Report. Reg. No FS 32989. NGI, 216 pp.;
(2) L. Põllumaa. PhD Thesis. Tallinn University of Technology, 2005
12 Oil-shale industry area (Kiviõli, Kohtla-Järve and Kukruse) groundwater, waste pore water ect samples Norway/TUT/NICPB Risk based environmental site assessment of the oil-shale industry in Estonia (2002-2003) Heavy metals, BTX, PAH etc 2002 20  +  +  + (1) Kahru, A. and Põllumaa, L. 2006. Oil Shale 23, 53-93.
(2) Leedjärv, A., et al. 2006. Chemosphere 64, 1910-1919
; (3) Põllumaa, L., et al. 2001. ATLA 29, 259-267;
(4) 9. Poolkoksi keskkonnaohtlikkuse määramine, KUK, 2003
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