{"id":1813,"date":"2015-10-14T11:23:13","date_gmt":"2015-10-14T08:23:13","guid":{"rendered":"http:\/\/kbfi.ee\/bioenergetics-2\/research\/publications\/2008-2\/"},"modified":"2020-07-02T16:17:06","modified_gmt":"2020-07-02T13:17:06","slug":"vanemad-2","status":"publish","type":"page","link":"https:\/\/kbfi.ee\/en\/cb\/research\/vanemad-2\/","title":{"rendered":"Earlier"},"content":{"rendered":"
\n

2008<\/h2>\n
    \n
  1. \n

    Eimre M., Paju K., Pelloux S., Beraud N., Roosimaa M., Kadaja L., Gruno M., Peet N., Orlova E., Remmelkoor R., Piirsoo A., Saks V.<\/strong>, Seppet E.<\/h4>\n

    Distinct organization of energy metabolism in HL-1 cardiac cell line and cardiomyocytes. Biochimica et Biophysica Acta (BBA) – Bioenergetics<\/em> (2008), 1777, 514 – 524.<\/p>\n<\/li>\n

  2. \n

    Kuznetsov, AV., Veksler V., Gellerich FN., Saks V.<\/strong>, Margreiter R., Kunz WS.<\/h4>\n

    Analysis of mitochondrial function in situ in permeabilized muscle fibers, tissues and cells. Nature Protocols<\/em> (2008), 3, 965-976<\/p>\n<\/li>\n

  3. \n

    Saks V.<\/strong><\/h4>\n

    The phosphocreatine-creatine kinase system helps to shape muscle cells and keep them healthy and alive. Journal of Physiology<\/em> (2008),586, 2817 – 2818.<\/p>\n<\/li>\n

  4. \n

    Monge C., Beraud N., Kuznetsov AV., Rostovtseva T., Sackett D., Schlattner U., Vendelin M., Saks V.<\/strong>. <\/h4>\n

    Regulation of respiration in brain mitochondria and synaptosomes: restrictions of ADP diffusion in situ, roles of tubulin, and mitochondrial creatine kinase. Molecular and Cellular Biochemistry<\/em> (2008), 318(1-2):147-65.<\/p>\n<\/li>\n

  5. \n

    Saks V.<\/strong>, Beraud N., Wallimann T.<\/h4>\n

    Metabolic compartmentation – A system level property of muscle cells. International Journal of Molecular Sciences<\/em> (2008), 9, 751 – 767.<\/p>\n<\/li>\n

  6. \n

    K\u00e4\u00e4mbre T., Sikk P., Anmann T., Tiivel T., Timohhina N., Nutt A., Tepp K., Saks V.<\/strong><\/h4>\n

    S\u00fcdamelihase rakkude struktuuri olulisusest rakuhingamise regulatsioonis. Eesti Arst<\/em> (2008), 19 – 22.<\/p>\n<\/li>\n

  7. \n

    Guzun, R., Timohhina N., K\u00e4\u00e4mbre T., Sikk P., Anmann T., Saks V.<\/strong><\/h4>\n

    Different steady state kinetics of regulation of MtCK-dependent respiration in isolated mitochondria and permeabilized cardiac cell in situ. Biophysical Society 52nd Annual Meeting & 16th International Biophysics Congress<\/em> (2008), February 2-6, Long Beach, California.<\/p>\n<\/li>\n

  8. \n

    Seppet E., Paju K., Roosimaa M., Kadaja L., Peet N., Eimre M., Orlova E., Saks V.<\/strong><\/h4>\n

    Distinct organization of energy metabolism in different types of cardiac cells. NATO Advanced Research Workshop on Translational Knowledge for Heart Research<\/em> (2008), Istanbul, Turkey; 12-16 May.<\/p>\n<\/li>\n

  9. \n

    Seppet E., Paju K., Roosimaa M., Kadaja L., Peet N., Eimre M., Orlova E., Saks V.<\/strong><\/h4>\n

    Distinct organization of energy metabolism in HL-1 cardiac cells and cardiomyocytes. Journal of Molecular and Cellular Cardiology<\/em> (2008), 44, 780 – 781.<\/p>\n<\/li>\n

  10. \n

    Saks V.<\/strong>, Engelbrecht J., Seppet E., Vendelin M.<\/h4>\n

    Teaduspreemia geo-ja bioteaduste alal t\u00f6\u00f6de ts\u00fckli “Molekulaarne s\u00fcsteemne bioenergeetika” eest. Villems,Richard (Eds.). Eesti Vabariigi teaduspreemiad (2008),(110 – 123). Tallinn: Eesti Teaduste Akadeemia.<\/p>\n<\/li>\n<\/ol>\n

    2007<\/h2>\n
      \n
    1. \n

      Saks V.<\/strong>, Vendelin M., Aliev M., Kekelidze T., Engelbrecht J.<\/h4>\n

      Mechanisms and modeling of energy transfer between and among intracellular compartments. In: \/Handbook of Neurochemistry and Molecular Neurobiology, 3edition\/, volume 5, \/Brain Energetics, \/ Dienel G. and Gibson G. (Editors), Springer Science, New York, (2007), 815-860.<\/p>\n<\/li>\n

    2. \n

      Saks V.<\/strong> (Editor)<\/h4>\n

      “Molecular System Bioenergetics. Energy for life”. (2007),Wiley-VCH, Manheim.<\/p>\n<\/li>\n

    3. \n

      Saks V., Anmann T.<\/strong>, Guzun R., K\u00e4\u00e4mbre T., Sikk P.<\/strong>, Schlattner U., Wallimann T., Aliev M., Vendelin M.<\/h4>\n

      The creatine kinase phosphotransfer network: thermodynamic and kinetic considerations, the impact of the mitochondrial outer membrane and modelling approaches. In Subcellular Biochemistry<\/em> (2007), vol. 46, “Creatine and Creatine Kinase in Health and Disease”, Wyss M., Salomons G. (Eds), Springer, Dordrecht, The Netherlands.<\/p>\n<\/li>\n

    4. \n

      Saks V.<\/strong>, Monge C., Anmann T.<\/strong>, Dzeja P.<\/h4>\n

      Integrated and organized cellular energetic systems: theories of cell energetics, compartmentation and metabolic channeling. In: “Molecular System Bioenergetics. Energy for life”.<\/em> (2007),Wiley -VCH, Manheim.<\/p>\n<\/li>\n

    5. \n

      Saks V.<\/strong>, Dzeja P., Guzun R., Aliev M., Vendelin M., Terzic A., Wallimann T.<\/h4>\n

      System analysis of cardiac energetics – excitation-contraction coupling: integration of mitochondrial respiration, phosphotransfer pathways, metabolic pacing and substrate supply in the heart. In: “Molecular System Bioenergetics. Energy for life”<\/em> (2007), Wiley -VCH, Manheim.<\/p>\n<\/li>\n

    6. \n

      Vendelin M.,Saks V.<\/strong>, Engelbrecht J.<\/h4>\n

      Principles of mathematical modeling and \/in silico\/ studies of integrated systems of cellular energetics. In:“Molecular System Bioenergetics. Energy for life”<\/em> (2007), Wiley -VCH, Manheim.<\/p>\n<\/li>\n

    7. \n

      Saks V.<\/strong><\/h4>\n

      From the discovery of oxygen to molecular system bioenergetics. In:“Molecular System Bioenergetics. Energy for life”<\/em> (2007), Wiley -VCH, Manheim.<\/p>\n<\/li>\n<\/ol>\n

      2006<\/h2>\n
        \n
      1. \n

        Beraud N., Pelloux,S., Kuznetsov,A., Guzun R., Anmann T.<\/strong>, Tourneur Y., Ojeda C., Saks V.<\/strong><\/h4>\n

        Comparative bioeneregetics of isolated cardiomyocytes and HL-1 cells: Mitochondrial dynamics, respiration regulation and creatine kinase expression. Biochim. Biophys. Acta-Bioenergetics, (Suppl.S)<\/em> (2006), 514 – 515.<\/p>\n<\/li>\n

      2. \n

        Eimre M., Seppet E., Paju K., Orlova E., Piirsoo A.; Sikk P., K\u00e4\u00e4mbre, T., Saks, V.<\/strong><\/h4>\n

        Kaltsiumist p\u00f5hjustatud sarkomeeride kontraktsioon muudab mitokondrite ja ATPaaside vahelist interaktsiooni permeabiliseeritud s\u00fcdamerakkudes. Eesti Arst<\/em> (2006), (9): 645 – 646.<\/p>\n<\/li>\n

      3. \n

        Anmann T.<\/strong>, Guzun R., Beraud N., Pelloux S., Kuznetsov A.V., Kogerman L.,K\u00e4\u00e4mbre T., Sikk, P.<\/strong>, Paju K., Peet N., Seppet E., Ojeda C., Tourneur Y., Saks V.<\/strong> <\/h4>\n

        Different kinetics of the regulation of respiration in permeabilized cardiomyocytes and in HL-1 cardiac cells. Biochim. Biophys. Acta-Bioenergetics<\/em> (2006), (12) 1757: 1597-1606.<\/p>\n<\/li>\n

      4. \n

        Saks V.<\/strong>, Aliev M., Guzun R., Beraud N., Monge C., Anmann T.<\/strong>, Kuznetsov A., Seppet E.<\/h4>\n

        Biophysics of the organized metabolic networks in muscle and brain cells. Recent Res. Devel. Biophys<\/em> (2006), (5) 269-318. Kerala, India: Transworld Research Networks.<\/p>\n<\/li>\n

      5. \n

        Seppet E.K., Eimre M., Anmann T.<\/strong>, Seppet E., Piirsoo A., Peet N., Paju K., Guzun R., Beraud N., Pelloux S., Tourneur Y., Kuznetsov AV., K\u00e4\u00e4mbre T., Sikk, P., Saks V.<\/strong><\/h4>\n

        Structure-function relationships in regulation of the energy transfer between mitochondria and ATPases in cardiac cells. Exp. Clin. Cardiol.<\/em> (2006), 11(3): 189 – 194.<\/p>\n<\/li>\n

      6. \n

        Saks V.<\/strong>, Dzeja P., Schlattner U., Vendelin M., Terzic A., Wallimann T.<\/h4>\n

        Cardiac system bioenergetics: metabolic basis of the Frank-Starling law. J. Physiol<\/em> (2006), 571(2): 253 – 273.<\/p>\n<\/li>\n

      7. \n

        Saks V.<\/strong>, Favier R., Guzun R., Schlattner U., Wallimann T. <\/h4>\n

        Molecular system bioenergetics: regulation of substrate supply in response to heart energy demands. J. Physiol<\/em> (2006), 577(Pt 3):769-77.<\/p>\n<\/li>\n

      8. \n

        Eimre M., Puhke R., Alev K., Seppet E., Sikkut A., Peet N., Kadaja L., Lenzner A., Haviko T., Seene T., Saks V.<\/strong><\/h4>\n

        Altered mitochondrial Altered mitochondrial apparent affinity for ADP and impaired function of mitochondrial creatine kinase in gluteus medius of patients with hip osteoarthritis. Am. J. Physiol. Regul. Integr. Comp. Physiol<\/em> (2006), 290:R1271-5.<\/p>\n<\/li>\n<\/ol>\n

        2005<\/h2>\n
          \n
        1. Vendelin, M., Beraud, M., Guerrero, K., Andrienko, T., Kuznetsov A. V., Olivares J., Kay L., Saks V.A<\/strong>. (2005). Mitochondrial regular arrangement in muscle cells: a “crystal-like” pattern. Am. J. Physiol. Cell. Physiol.<\/em> 288<\/em> (3): C757-C767.<\/li>\n
        2. Seppet, E., Eimre, M., Peet, N., Paju, K., Orlova, E., Ress, M., Kovask, S., Piirsoo, A., Saks, V. A.,<\/strong> Gellerich, F. N., Zierz, S., Seppet, E. K. (2005). Compartmentation of energy metabolism in atrial myocardium of patients undergoing cardiac surgery.\u00a0Mol. Cell. Biochem.<\/em> 270(1-2): 49-61.<\/li>\n
        3. Saks, V.,<\/strong> Guerrero, K., Vendelin, M., Engelbrecht, J. Seppet E. (2005). The creatine kinase isoenzymes in organized metabolic networks and regulation of cellular respiration: a new role for Maxwell\u0092s demon. In: Creatine Kinase (Vial C., Ed.) in series: Molecular Anatomy and Physiology of Proteins (Uversky V.N., series Ed.)<\/em>, NovaScience Publishers, New York.<\/li>\n
        4. Saks, V.A.,<\/strong> Vendelin, M., Aliev M.K. Kekelidze, T. and \u00a0<\/sup>Engelbrecht, J. (2005). Mechanisms and modeling of energy transfer between and among intracellular compartments. In: Handbook of Neurochemistry and Molecular Neurobiology, 3edition<\/em>, volume 5, Neural Energy Utilization, <\/em>\u00a0Dienel G. and Gibson G., the Editors, Springer Science + Business Media, New York-Boston.<\/li>\n
        5. Anmann, T.,<\/strong> Eimre, M, Kuznetsov, A.V., Andrienko, T.,\u00a0<\/sup> K\u00e4\u00e4mbre, T.<\/strong>, Sikk, P.<\/strong>, Seppet, E., Tiivel, T., Vendelin, M., Seppet, E., Saks V.A.<\/strong> (2005). Calcium-induced contraction of sarcomeres changes regulation of mitochondrial respiration in permeabilized cardiac cells. FEBS Journal<\/em> 272 (12): 3145-3161.<\/li>\n
        6. Seppet, E. K., Eimre, M., Anmann, T.<\/strong>, Seppet E., Peet N., K\u00e4\u00e4mbre, T.<\/strong>, Paju K., Piirsoo, A., Kuznetsov, A. V., Vendelin, M., Gellerich, F: N., Zierz S., Saks V. A.<\/strong>, (2005). Intracellular energetic units in healthy and diseased hearts. Exp. Clin. Cardiol<\/em>. 10(3): 173-183.<\/li>\n<\/ol>\n

          2005<\/h2>\n
            \n
          1. Varikmaa M.,\u00a0<\/strong>Bagur R.,\u00a0Kaambre T.,\u00a0<\/strong>Grichine A.,\u00a0Timohhina N.<\/strong>,\u00a0<\/strong>Tepp K.<\/strong>,\u00a0Shevchuk I.<\/strong>,\u00a0Chekulayev V.<\/strong>,\u00a0<\/strong>Metsis M., Boucher F.,\u00a0Kuznetsov A.V., Guzun R. (2014). Role of mitochondria-cytoskeleton interactions in respiration regulation and mitochondrial organization in striated muscles.\u00a0Biochim Biophys Acta.\u00a0<\/em>1837(2):232-45.<\/li>\n
          2. Klepinin A.,\u00a0<\/strong>Chekulayev V.,\u00a0<\/strong>Timohhina N.<\/strong>,\u00a0<\/strong>Shevchuk I.<\/strong>,\u00a0Tepp K.,\u00a0<\/strong>Kaldma A.,\u00a0<\/strong>Koit A.,\u00a0<\/strong>Saks V., Kaambre T.\u00a0<\/strong>(2013).\u00a0Comparative analysis of some aspects of mitochondrial metabolism in differentiated and undifferentiated neuroblastoma cells.\u00a0J. Bioenerg. Biomembr.\u00a0<\/em>46(1):17-31.<\/li>\n
          3. Anmann T.,<\/strong>\u00a0Varikmaa M.,\u00a0Timohhina N.<\/strong>,\u00a0<\/strong>Tepp K.<\/strong>,\u00a0Shevchuk I.<\/strong>,\u00a0Chekulayev V.<\/strong>,\u00a0Saks V.,\u00a0K\u00e4\u00e4mbre T.\u00a0<\/strong>(2014).\u00a0Formation of highly organized intracellular structure and metabolism in cardiac muscle cells during postnatal development of rat heart.\u00a0Biochim Biophys Acta.<\/em>\u00a0doi: 10.1016\/j.bbabio.2014.03.015.<\/li>\n
          4. Guzun R.,\u00a0Kaambre T.,\u00a0<\/strong>Bagur R., Grichine A., Usson Y.,\u00a0Varikmaa M.,\u00a0<\/strong>Anmann T.,\u00a0<\/strong>Tepp K.,\u00a0<\/strong>Timohhina N.<\/strong>,\u00a0<\/strong>Shevchuk I.<\/strong>,\u00a0Chekulayev V.<\/strong>,\u00a0Boucher F.,\u00a0Schlattner U.,\u00a0Wallimann T., Kuznetsov, AV., Dzeja P., Aliev M.,\u00a0Saks V.\u00a0<\/strong>(2014). Modular organization of cardiac energy metabolism: energy conversion, transfer and feedback regulation.\u00a0Acta Physiologica.\u00a0<\/em>doi: 10.1111\/apha.12287.<\/li>\n
          5. Timohhina N.,\u00a0<\/strong>Tepp K.,\u00a0<\/strong>Klepinin A.,\u00a0<\/strong>Mado K.,\u00a0<\/strong>Chekulayev V.,\u00a0<\/strong>Shevchuk I.,\u00a0<\/strong>Kaambre T. <\/strong>(2014). Age-related changes in the cardiac cell functioning.\u00a0Biochim Biophys Acta. <\/em>1837, e128.<\/li>\n
          6. Klepinin A.,\u00a0<\/strong>Kaldma A.,\u00a0<\/strong>Chekulayev V.,\u00a0Mado K.,\u00a0Shevchuk I.,\u00a0\u00a0<\/strong>Timohhina N.,\u00a0<\/strong>Tepp K.,\u00a0<\/strong>\u00a0<\/strong>Kandashvili M.,<\/strong>\u00a0<\/strong>Koit A., <\/strong>Heck K., Truu L., Planken A.,\u00a0<\/strong>Kaambre T.<\/strong>(2014). Studies of the role of CK and AK energy transfer pathway in human colorectal cancer.\u00a0Biochim. Biophys. Acta.\u00a0<\/em>1837, e65.<\/li>\n
          7. Shevchuk I.,\u00a0<\/strong>Kaldma A.,\u00a0<\/strong>Koit A.,\u00a0<\/strong>Chekulayev V.,\u00a0<\/strong>Timohhina N.,\u00a0<\/strong>Tepp K.,\u00a0<\/strong>Mado K.,\u00a0<\/strong>Kandashvili M.,<\/strong>\u00a0<\/strong>Heck K., Truu L., Planken A.,\u00a0<\/strong>Kaambre T. <\/strong>(2014). Bioenergetic profiling of human colorectal cancer clinical material.\u00a0Biochim. Biophys. Acta.\u00a0<\/em>1837, e129.<\/li>\n
          8. Kaldma A.,\u00a0Klepinin A.,\u00a0Chekulayev V., Mado K.,\u00a0<\/strong>Shevchuk I.,\u00a0Timohhina N.,\u00a0<\/strong>Tepp K., Kandashvili M.,\u00a0\u00a0<\/strong>Varikmaa M., Koit A.,\u00a0<\/strong>Planken M., Heck K., Truu L., Planken A.,\u00a0<\/strong>Kaambre T.\u00a0<\/strong>(2014)\u00a0An in situ study of bioenergetic properties of human colorectal cancer: the regulation of mitochondrial respiration and distribution of\u00a0flux control among the components of ATP synthasome.\u00a0Int.\u00a0J. Biochem. Cell Biol.<\/em><\/li>\n
          9. Tepp K.,\u00a0<\/strong>Mado K.,\u00a0Varikmaa M.,\u00a0Klepinin A.,\u00a0Timohhina N.,\u00a0<\/strong>Shevchuk I.,\u00a0<\/strong>Chekulayev V.,\u00a0<\/strong>Kuznetsov A.V., Guzun R.,\u00a0\u00a0Kaambre T.\u00a0<\/strong>(2014). The role of tubulin in the mitochondrial metabolism and arrangement in muscle cells.\u00a0J. Bioener. Biomembr.<\/em><\/li>\n
          10. Systems Biology of Metabolic and Signalling Networks: Energy, Mass and Information Transfer. M. Aon., V. Saks.<\/strong>, U. Schlattner (Editors) (2014).\u00a0Book series: Springer Series in Biophysics.<\/em> Vol. 16, 375 p.\u00a0SPRINGER-VERLAG BERLIN, Germany.<\/li>\n
          11. M. Aon, D. Lloyd, \u00a0V. Saks. <\/strong>(2014). From Physiology, Genomes, Systems, and self-Organization to Systems Biology: The Historical Roots of a Twenty-First Century Approach to Complexity. In:\u00a0Systems Biology of Metabolic and Signalling Networks: Energy, Mass and Information Transfer<\/em>.\u00a0<\/em>Vol.16,\u00a0pp\u00a03-17.\u00a0Eds:\u00a0M. Aon.,\u00a0V. Saks.<\/strong>, U. Schlattner.\u00a0SPRINGER-VERLAG BERLIN, Germany.<\/li>\n
          12. Saks V.,\u00a0<\/strong>Schlattner U., Tokarska-Schlattner M., Wallimann T., Bagur R., Zorman S., Pelosse M., Dos Santos P., Boucher F.,\u00a0Kaambre T.<\/strong>, Guzun R.\u00a0(2014).\u00a0Systems level regulation of cardiac energy fluxes via metabolic cycles: role of creatine, phosphotransfer pathways, and AMPK signaling.\u00a0In:\u00a0Systems Biology of Metabolic and signaling Networks: Energy, Mass and Information Transfer. Vol.16,\u00a0pp\u00a0<\/em>261-320.\u00a0<\/em>Eds. Aon MA., Saks V., Schlattner U.\u00a0SPRINGER-VERLAG BERLIN, Germany.<\/li>\n<\/ol>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

            2008 Eimre M., Paju K., Pelloux S., Beraud N., Roosimaa M., Kadaja L., Gruno M., Peet N., Orlova E., Remmelkoor R., Piirsoo A., Saks V., Seppet E. <\/a><\/p>\n","protected":false},"author":33,"featured_media":0,"parent":1382,"menu_order":0,"comment_status":"open","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-1813","page","type-page","status-publish","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/kbfi.ee\/en\/wp-json\/wp\/v2\/pages\/1813"}],"collection":[{"href":"https:\/\/kbfi.ee\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/kbfi.ee\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/kbfi.ee\/en\/wp-json\/wp\/v2\/users\/33"}],"replies":[{"embeddable":true,"href":"https:\/\/kbfi.ee\/en\/wp-json\/wp\/v2\/comments?post=1813"}],"version-history":[{"count":0,"href":"https:\/\/kbfi.ee\/en\/wp-json\/wp\/v2\/pages\/1813\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/kbfi.ee\/en\/wp-json\/wp\/v2\/pages\/1382"}],"wp:attachment":[{"href":"https:\/\/kbfi.ee\/en\/wp-json\/wp\/v2\/media?parent=1813"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}